Contact: jonquet@stanford.edu
To annotate some biomedical resources content to identify the biomedical concepts to which they relate and provide the annotations
Please refer to the NCBO wiki now: http://www.bioontology.org/wiki/index.php/Resource_Index
To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations
Please refer to the NCBO wiki now: http://www.bioontology.org/wiki/index.php/Annotator_Web_service
To automatically recommend an ontology to use for semantic annotations
Please refer to the NCBO wiki now: http://www.bioontology.org/wiki/index.php/Ontology_Recommender_Web_service
The hierarchy services have been released in April 2009: Please refer to the NCBO wiki now: http://bioontology.org/wiki/index.php/BioPortal_REST_services#Hierarchy_Services. Please use those services.
You can test them here: http://rest.bioontology.org/test_obs.html
The rest of the ontology services prototypes are still described hereafter:
February 2009 - New prototype that should be released in April 2009. http://ncbo-obs-stage1:8080/test_obs.html.
October 2008 - The first prototype (v1) has been released for testing and evaluation. Please check it out: http://obs.bioontology.org/obs/OBS_v1_rest.html
Version 08-12-04 : OntologyAccess081204.jar
Compliant with BioPortal 2.0
Version 09-01-08 : OntologyAccess090108.jar
Compliant with BioPortal 2.0.3. Note the string to concepts mapping function have not been updated for BioPortalAccessTool. To be done soon.
Version 09-04-02 : OntologyAccess090402.jar
Compliant with BioPortal 2.0.4. With reimplementation of the search (string to concepts mapping function) and synonyms feature for OWL ontologies.
Version 09-09-02 : OntologyAccess090902.jar
Some small changes.
http://obs.bioontology.org/docs/
https://bmir-gforge.stanford.edu/gf/project/obs